You might have some disabled clips in your timeline, disabled by turning off the Role checkbox in the Roles tab of the timeline index.
This information about the role status is not exported into FCPXML, so there is no way to know that that role had been disabled. Therefore all the clips of that role will appear in FCP enabled.
This is something Apple would have to change. https://www.apple.com/feedback/finalcutpro/
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